diff --git a/pom.xml b/pom.xml index 0b82e86..a6c0820 100644 --- a/pom.xml +++ b/pom.xml @@ -4,7 +4,7 @@ 4.0.0 edu.pitt.dbmi causal-cmd - 1.10.0 + 1.11.0 jar @@ -22,7 +22,7 @@ io.github.cmu-phil tetrad-lib - 7.5.0 + 7.6.0 org.slf4j diff --git a/src/main/java/edu/pitt/dbmi/causal/cmd/tetrad/TetradRunner.java b/src/main/java/edu/pitt/dbmi/causal/cmd/tetrad/TetradRunner.java index 25f3fe1..395fb3c 100644 --- a/src/main/java/edu/pitt/dbmi/causal/cmd/tetrad/TetradRunner.java +++ b/src/main/java/edu/pitt/dbmi/causal/cmd/tetrad/TetradRunner.java @@ -31,11 +31,11 @@ import edu.cmu.tetrad.data.Knowledge; import edu.cmu.tetrad.graph.Dag; import edu.cmu.tetrad.graph.Graph; +import edu.cmu.tetrad.graph.GraphTransforms; import edu.cmu.tetrad.graph.GraphUtils; import edu.cmu.tetrad.graph.Node; import edu.cmu.tetrad.graph.NodeType; import edu.cmu.tetrad.search.utils.DagToPag; -import edu.cmu.tetrad.search.utils.GraphSearchUtils; import edu.cmu.tetrad.search.utils.TsDagToPag; import edu.cmu.tetrad.util.Parameters; import edu.pitt.dbmi.causal.cmd.AlgorithmRunException; @@ -236,7 +236,7 @@ private Graph manipulateGraph(Graph graph) { if (cmdArgs.isChooseMagInPag()) { try { - graph = GraphSearchUtils.pagToMag(graph); + graph = GraphTransforms.pagToMag(graph); } catch (Exception exception) { LOGGER.error("Unable to choose MAG in PAG.", exception); } @@ -244,7 +244,7 @@ private Graph manipulateGraph(Graph graph) { if (cmdArgs.isGeneratePatternFromDag()) { try { - graph = GraphSearchUtils.cpdagFromDag(graph); + graph = GraphTransforms.cpdagForDag(graph); } catch (Exception exception) { LOGGER.error("Unable to generate pattern graph from DAG.", exception); }