From 67dfdbf36dd97645e4f3e63cee1178879876139e Mon Sep 17 00:00:00 2001
From: Joseph Ramsey <jdramsey@andrew.cmu.edu>
Date: Fri, 19 May 2023 12:10:58 -0400
Subject: [PATCH 1/5] Update README.md

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index d56f216..ea6889f 100644
--- a/README.md
+++ b/README.md
@@ -10,4 +10,4 @@ https://s01.oss.sonatype.org/content/repositories/releases/io/github/cmu-phil/ca
 
 Here is the current jar to use for causal-cmd:
 
-https://s01.oss.sonatype.org/content/repositories/releases/io/github/cmu-phil/causal-cmd/1.8.0/causal-cmd-1.8.0-jar-with-dependencies.jar
+https://s01.oss.sonatype.org/content/repositories/releases/io/github/cmu-phil/causal-cmd/1.9.0/causal-cmd-1.9.0-jar-with-dependencies.jar

From 752321fb60a2d67908d1a8ee4b91960f077eb708 Mon Sep 17 00:00:00 2001
From: Kevin Bui <kvb2univpitt@gmail.com>
Date: Sun, 6 Aug 2023 11:46:27 -0400
Subject: [PATCH 2/5] Update tetrad-lib to the latest version 7.5.0.

---
 pom.xml                                                    | 2 +-
 src/main/java/edu/pitt/dbmi/causal/cmd/data/DataFiles.java | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/pom.xml b/pom.xml
index 8017532..f0eaa10 100644
--- a/pom.xml
+++ b/pom.xml
@@ -22,7 +22,7 @@
         <dependency>
             <groupId>io.github.cmu-phil</groupId>
             <artifactId>tetrad-lib</artifactId>
-            <version>7.4.0</version>
+            <version>7.5.0</version>
             <exclusions>
                 <exclusion>
                     <groupId>org.slf4j</groupId>
diff --git a/src/main/java/edu/pitt/dbmi/causal/cmd/data/DataFiles.java b/src/main/java/edu/pitt/dbmi/causal/cmd/data/DataFiles.java
index 41c323a..aae1f68 100644
--- a/src/main/java/edu/pitt/dbmi/causal/cmd/data/DataFiles.java
+++ b/src/main/java/edu/pitt/dbmi/causal/cmd/data/DataFiles.java
@@ -24,7 +24,7 @@
 import edu.cmu.tetrad.data.Knowledge;
 import edu.cmu.tetrad.data.SimpleDataLoader;
 import edu.cmu.tetrad.graph.Graph;
-import edu.cmu.tetrad.graph.GraphPersistence;
+import edu.cmu.tetrad.graph.GraphSaveLoadUtils;
 import edu.cmu.tetrad.util.DataConvertUtils;
 import edu.pitt.dbmi.causal.cmd.AlgorithmRunException;
 import edu.pitt.dbmi.causal.cmd.CmdArgs;
@@ -120,7 +120,7 @@ public static Graph readInExternalGraph(CmdArgs cmdArgs, PrintStream out) throws
             return null;
         } else {
             LogMessages.readingFileStart(file, LOGGER, out);
-            Graph graph = GraphPersistence.loadGraphTxt(file.toFile());
+            Graph graph = GraphSaveLoadUtils.loadGraphTxt(file.toFile());
             LogMessages.readingFileEnd(file, LOGGER, out);
 
             return graph;

From 66b06843686f7efe421ba75d5380a628a6d0acf7 Mon Sep 17 00:00:00 2001
From: Kevin Bui <kvb2univpitt@gmail.com>
Date: Sun, 6 Aug 2023 13:09:53 -0400
Subject: [PATCH 3/5] Bumped up to offical version.

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index f0eaa10..0b82e86 100644
--- a/pom.xml
+++ b/pom.xml
@@ -4,7 +4,7 @@
     <modelVersion>4.0.0</modelVersion>
     <groupId>edu.pitt.dbmi</groupId>
     <artifactId>causal-cmd</artifactId>
-    <version>1.9.0-SNAPSHOT</version>
+    <version>1.10.0</version>
     <packaging>jar</packaging>
 
     <properties>

From e96ef032d930640e50582e63eba1bb2eef2ca850 Mon Sep 17 00:00:00 2001
From: Kevin Bui <kvb2univpitt@gmail.com>
Date: Sun, 6 Aug 2023 13:18:21 -0400
Subject: [PATCH 4/5] Updated version number in documentation.

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index ea6889f..f298c29 100644
--- a/README.md
+++ b/README.md
@@ -10,4 +10,4 @@ https://s01.oss.sonatype.org/content/repositories/releases/io/github/cmu-phil/ca
 
 Here is the current jar to use for causal-cmd:
 
-https://s01.oss.sonatype.org/content/repositories/releases/io/github/cmu-phil/causal-cmd/1.9.0/causal-cmd-1.9.0-jar-with-dependencies.jar
+https://s01.oss.sonatype.org/content/repositories/releases/io/github/cmu-phil/causal-cmd/1.10.0/causal-cmd-1.10.0-jar-with-dependencies.jar

From aad2ab62f118cb8b81774e4ea5545aae1ef1516e Mon Sep 17 00:00:00 2001
From: Kevin Bui <kvb2univpitt@gmail.com>
Date: Sun, 6 Aug 2023 13:40:48 -0400
Subject: [PATCH 5/5] Bumped up to the next version.

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index 0b82e86..9f2baab 100644
--- a/pom.xml
+++ b/pom.xml
@@ -4,7 +4,7 @@
     <modelVersion>4.0.0</modelVersion>
     <groupId>edu.pitt.dbmi</groupId>
     <artifactId>causal-cmd</artifactId>
-    <version>1.10.0</version>
+    <version>1.11.0-SNAPSHOT</version>
     <packaging>jar</packaging>
 
     <properties>