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3dANOVA2.json
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3dANOVA2.json
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{
"command-line": "3dANOVA2 [TYPE] [ALEVELS] [BLEVELS] [DSET] [AMEAN] [ADIFF] [ACONTR] [FA] [BUCKET]",
"description": "tool description",
"inputs": [
{
"command-line-flag": "-type",
"description": "type of ANOVA model to be used: k=1 fixed effects model (A and B fixed) k=2 random effects model (A and B random) k=3 mixed effects model (A fixed, B random)",
"id": "TYPE",
"name": "TYPE",
"optional": true,
"type": "String",
"value-key": "[TYPE]"
},
{
"command-line-flag": "-alevels",
"description": "a = number of levels of factor A",
"id": "ALEVELS",
"name": "ALEVELS",
"optional": true,
"type": "String",
"value-key": "[ALEVELS]"
},
{
"command-line-flag": "-blevels",
"description": "b = number of levels of factor B",
"id": "BLEVELS",
"name": "BLEVELS",
"optional": true,
"type": "String",
"value-key": "[BLEVELS]"
},
{
"command-line-flag": "-dset",
"description": "data set for level 1 of factor A and level 1 of factor B . . . . . .",
"id": "DSET",
"name": "DSET",
"optional": true,
"type": "String",
"value-key": "[DSET]"
},
{
"command-line-flag": "-amean",
"description": "-amean 1 Chocolate \\",
"id": "AMEAN",
"name": "AMEAN",
"optional": true,
"type": "String",
"value-key": "[AMEAN]"
},
{
"command-line-flag": "-adiff",
"description": "-adiff 1 2 CvsG \\",
"id": "ADIFF",
"name": "ADIFF",
"optional": true,
"type": "String",
"value-key": "[ADIFF]"
},
{
"command-line-flag": "-acontr",
"description": "-acontr 1 1 -2 CGvsS \\",
"id": "ACONTR",
"name": "ACONTR",
"optional": true,
"type": "String",
"value-key": "[ACONTR]"
},
{
"command-line-flag": "-fa",
"description": "-fa Donuts \\",
"id": "FA",
"name": "FA",
"optional": true,
"type": "String",
"value-key": "[FA]"
},
{
"command-line-flag": "-bucket",
"description": "-bucket ANOVA_results The -bucket option will place all of the 3dANOVA2 results (i.e., main effect of DONUTS, means for each of the 3 levels of DONUTS, and contrasts between the 3 levels of DONUTS) into one big dataset with multiple sub-bricks called ANOVA_results+tlrc. ----------------------------------------------------------- N.B.: For this program, the user must specify 1 and only 1 sub-brick with each -dset command. That is, if an input dataset contains more than 1 sub-brick, a sub-brick selector must be used, e.g.: -dset 2 4 'fred+orig[3]' INPUT DATASET NAMES ------------------- This program accepts datasets that are modified on input according to the following schemes: 'r1+orig[3..5]' {sub-brick selector} 'r1+orig<100..200>' {sub-range selector} 'r1+orig[3..5]<100..200>' {both selectors} '3dcalc( -a r1+orig -b r2+orig -expr 0.5*(a+b) )' {calculation} For the gruesome details, see the output of 'afni -help'. Also see HowTo #5: Group Analysis on the AFNI website: https://afni.nimh.nih.gov/pub/dist/HOWTO/howto/ht05_group/html/index.shtml ------------------------------------------------------------------------- STORAGE FORMAT: --------------- The default output format is to store the results as scaled short (16-bit) integers. This truncantion might cause significant errors. If you receive warnings that look like this: *+ WARNING: TvsF[0] scale to shorts misfit = 8.09% -- *** Beware then you can force the results to be saved in float format by defining the environment variable AFNI_FLOATIZE to be YES before running the program. For convenience, you can do this on the command line, as in 3dANOVA -DAFNI_FLOATIZE=YES ... other options ... Also see the following links: https://afni.nimh.nih.gov/pub/dist/doc/program_help/common_options.html https://afni.nimh.nih.gov/pub/dist/doc/program_help/README.environment.html ++ Compile date = Sep 7 2018 {:}",
"id": "BUCKET",
"name": "BUCKET",
"optional": true,
"type": "String",
"value-key": "[BUCKET]"
}
],
"name": "tool name",
"schema-version": "0.5",
"suggested-resources": {
"cpu-cores": 1,
"ram": 1,
"walltime-estimate": 60
},
"tags": {},
"tool-version": "v0.1.0"
}