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2perm.json
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2perm.json
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{
"command-line": "2perm [PREFIX] [COMMA] [BOT] [TOP]",
"description": "tool description",
"inputs": [
{
"command-line-flag": "-prefix",
"description": "Two output files are created, with names PPP_A and PPP_B, where 'PPP' is the given prefix. If no '-prefix' option is given, then the string 'AFNIroolz' will be used. ++ Each file is a single column of numbers. ++ Note that the filenames do NOT end in '.1D'.",
"id": "PREFIX",
"name": "PREFIX",
"optional": true,
"type": "String",
"value-key": "[PREFIX]"
},
{
"command-line-flag": "-comma",
"description": "Write each file as a single row of comma-separated numbers. EXAMPLE: ======== This illustration shows the purpose of 2perm -- for use in permutation and/or randomization tests of statistical significance and power. Given a dataset with 100 sub-bricks (indexed 0..99), split it into two random halves and do a 2-sample t-test between them. 2perm -prefix Q50 0 99 3dttest++ -setA dataset+orig\"[1dcat Q50_A]\" \\ -setB dataset+orig\"[1dcat Q50_B]\" \\ -no1sam -prefix Q50 \\rm -f Q50_? Alternatively: 2perm -prefix Q50 -comma 0 99 3dttest++ -setA dataset+orig\"[`cat Q50_A`]\" \\ -setB dataset+orig\"[`cat Q50_B`]\" \\ -no1sam -prefix Q50 \\rm -f Q50_? Note the combined use of the double quote \" and backward quote ` shell operators in this second approach. AUTHOR: (no one want to admit they wrote this trivial code). ++ Compile date = Sep 7 2018 {:}",
"id": "COMMA",
"name": "COMMA",
"optional": true,
"type": "String",
"value-key": "[COMMA]"
},
{
"description": "NA",
"id": "bot",
"name": "bot",
"optional": false,
"type": "String",
"value-key": "[BOT]"
},
{
"description": "NA",
"id": "top",
"name": "top",
"optional": false,
"type": "String",
"value-key": "[TOP]"
}
],
"name": "tool name",
"schema-version": "0.5",
"suggested-resources": {
"cpu-cores": 1,
"ram": 1,
"walltime-estimate": 60
},
"tags": {},
"tool-version": "v0.1.0"
}