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env.json
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env.json
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{
"postactivate_HPC": [
"# We don't want UPPMAX's custom python",
"PATH=\"${PATH/'/sw/comp/python/2.6.6_kalkyl/bin'}\"",
"# We unset PYTHONHOME set by the module system,",
"# otherwise the system will not use the python",
"# of virtualenv",
"unset PYTHONHOME",
"# Make the modules load after activating a virtual environment",
"source ~/.modules"
],
"postactivate_non_root": [
"export PICARD_HOME=/usr/share/java/picard",
"export SNPEFF_HOME=/usr/share/java/snpeff",
"export GATK_HOME=/usr/share/java/gatk"
],
".bashrc_HPC": [
"# User specific aliases and functions",
"#Set up python and virtualenvenvironmen",
"export PATH=$PATH:~/opt/mypython/bin",
"export PYTHONPATH={pythonpath}",
"# startup virtualenv-burrito",
"if [ -f $HOME/.venvburrito/startup.sh ]; then",
" . $HOME/.venvburrito/startup.sh",
"fi",
"export WORKON_HOME=~/.virtualenvs",
"export MODULEPATH=${MODULEPATH}:~/opt/modules",
"#Set up umask so created files/directories are read/writeable by group",
"umask 007",
"#Set up python DRMAA module",
"export DRMAA_LIBRARY_PATH=/bubo/sw/apps/build/slurm-drmaa/1.0.5/lib/libdrmaa.so",
"export DRMAA_PATH=$DRMAA_LIBRARY_PATH"
],
".bashrc_non_root": [
"# User specific aliases and functions",
"#Set up python and virtualenvenvironmen",
"export PATH=$PATH:~/opt/mypython/bin",
"export PYTHONPATH={pythonpath}",
"if [ -f $HOME/.venvburrito/startup.sh ]; then",
" . $HOME/.venvburrito/startup.sh",
"fi",
"export WORKON_HOME=~/.virtualenvs",
"#Set up umask so created files/directories are read/writeable by group",
"umask 007"
]
}