From ec8964d2e2aef2a9cc29d7c2f431355c4186cb5d Mon Sep 17 00:00:00 2001 From: hbaniecki Date: Thu, 24 Aug 2023 12:58:05 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20ModelOri?= =?UTF-8?q?ented/modelStudio@0d56ac01e6b39709b9e5ac879850763ab3221965=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- articles/ms-perks-features.html | 4 +- articles/ms-r-python-examples.html | 2 +- articles/ms-rmarkdown.html | 8 +- .../htmlwidgets-1.6.2/htmlwidgets.js | 901 ++++++++++++++++++ index.html | 4 +- pkgdown.yml | 2 +- .../libs/htmlwidgets-1.6.2/htmlwidgets.js | 901 ++++++++++++++++++ reference/modelStudio.html | 24 +- reference/ms_merge_observations.html | 6 +- reference/ms_options.html | 8 +- reference/ms_update_observations.html | 12 +- reference/ms_update_options.html | 8 +- 12 files changed, 1841 insertions(+), 39 deletions(-) create mode 100644 articles/ms-rmarkdown_files/htmlwidgets-1.6.2/htmlwidgets.js create mode 100644 reference/libs/htmlwidgets-1.6.2/htmlwidgets.js diff --git a/articles/ms-perks-features.html b/articles/ms-perks-features.html index ae3276f..855af51 100644 --- a/articles/ms-perks-features.html +++ b/articles/ms-perks-features.html @@ -104,7 +104,7 @@

modelStudio - perks and features

Hubert Baniecki

-

2023-02-21

+

2023-08-24

Source: vignettes/ms-perks-features.Rmd @@ -420,7 +420,7 @@

Shiny to render the modelStudio output in Shiny. See Using r2d3 with Shiny and consider the following example:

-library(shiny)
+library(shiny)
 library(r2d3)
 
 
diff --git a/articles/ms-r-python-examples.html b/articles/ms-r-python-examples.html
index c0d6270..8575a75 100644
--- a/articles/ms-r-python-examples.html
+++ b/articles/ms-r-python-examples.html
@@ -104,7 +104,7 @@ 
modelStudio - R & Python examples

                         
Hubert
 Baniecki

             
-            
2023-02-21

+            
2023-08-24

       
       Source: vignettes/ms-r-python-examples.Rmd
       
diff --git a/articles/ms-rmarkdown.html b/articles/ms-rmarkdown.html
index c597426..8641b73 100644
--- a/articles/ms-rmarkdown.html
+++ b/articles/ms-rmarkdown.html
@@ -97,14 +97,14 @@
 
       
 
-      

+      

   

     

       
modelStudio in R Markdown HTML

                         
Hubert
 Baniecki

             
-            
2023-02-21

+            
2023-08-24

       
       Source: vignettes/ms-rmarkdown.Rmd
       
@@ -161,8 +161,8 @@ 
2023-02-21

 
 # make a studio for the model
 modelStudio(explainer)
-
- +
+

-

CRAN_Status_Badge R build status Coverage Status JOSS-status

+

CRAN_Status_Badge R build status Codecov test coverage JOSS-status

Overview

@@ -390,7 +390,7 @@

CitationsDMKD article:

+

For a description and evaluation of the Interactive EMA process, refer to our DAMI article:

@article{baniecki2023grammar,
   title   = {The grammar of interactive explanatory model analysis},
   author  = {Hubert Baniecki and Dariusz Parzych and Przemyslaw Biecek},
diff --git a/pkgdown.yml b/pkgdown.yml
index 2ddf2c4..9f704aa 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -5,5 +5,5 @@ articles:
   ms-perks-features: ms-perks-features.html
   ms-r-python-examples: ms-r-python-examples.html
   ms-rmarkdown: ms-rmarkdown.html
-last_built: 2023-02-21T16:35Z
+last_built: 2023-08-24T12:54Z
 
diff --git a/reference/libs/htmlwidgets-1.6.2/htmlwidgets.js b/reference/libs/htmlwidgets-1.6.2/htmlwidgets.js
new file mode 100644
index 0000000..1067d02
--- /dev/null
+++ b/reference/libs/htmlwidgets-1.6.2/htmlwidgets.js
@@ -0,0 +1,901 @@
+(function() {
+  // If window.HTMLWidgets is already defined, then use it; otherwise create a
+  // new object. This allows preceding code to set options that affect the
+  // initialization process (though none currently exist).
+  window.HTMLWidgets = window.HTMLWidgets || {};
+
+  // See if we're running in a viewer pane. If not, we're in a web browser.
+  var viewerMode = window.HTMLWidgets.viewerMode =
+      /\bviewer_pane=1\b/.test(window.location);
+
+  // See if we're running in Shiny mode. If not, it's a static document.
+  // Note that static widgets can appear in both Shiny and static modes, but
+  // obviously, Shiny widgets can only appear in Shiny apps/documents.
+  var shinyMode = window.HTMLWidgets.shinyMode =
+      typeof(window.Shiny) !== "undefined" && !!window.Shiny.outputBindings;
+
+  // We can't count on jQuery being available, so we implement our own
+  // version if necessary.
+  function querySelectorAll(scope, selector) {
+    if (typeof(jQuery) !== "undefined" && scope instanceof jQuery) {
+      return scope.find(selector);
+    }
+    if (scope.querySelectorAll) {
+      return scope.querySelectorAll(selector);
+    }
+  }
+
+  function asArray(value) {
+    if (value === null)
+      return [];
+    if ($.isArray(value))
+      return value;
+    return [value];
+  }
+
+  // Implement jQuery's extend
+  function extend(target /*, ... */) {
+    if (arguments.length == 1) {
+      return target;
+    }
+    for (var i = 1; i < arguments.length; i++) {
+      var source = arguments[i];
+      for (var prop in source) {
+        if (source.hasOwnProperty(prop)) {
+          target[prop] = source[prop];
+        }
+      }
+    }
+    return target;
+  }
+
+  // IE8 doesn't support Array.forEach.
+  function forEach(values, callback, thisArg) {
+    if (values.forEach) {
+      values.forEach(callback, thisArg);
+    } else {
+      for (var i = 0; i < values.length; i++) {
+        callback.call(thisArg, values[i], i, values);
+      }
+    }
+  }
+
+  // Replaces the specified method with the return value of funcSource.
+  //
+  // Note that funcSource should not BE the new method, it should be a function
+  // that RETURNS the new method. funcSource receives a single argument that is
+  // the overridden method, it can be called from the new method. The overridden
+  // method can be called like a regular function, it has the target permanently
+  // bound to it so "this" will work correctly.
+  function overrideMethod(target, methodName, funcSource) {
+    var superFunc = target[methodName] || function() {};
+    var superFuncBound = function() {
+      return superFunc.apply(target, arguments);
+    };
+    target[methodName] = funcSource(superFuncBound);
+  }
+
+  // Add a method to delegator that, when invoked, calls
+  // delegatee.methodName. If there is no such method on
+  // the delegatee, but there was one on delegator before
+  // delegateMethod was called, then the original version
+  // is invoked instead.
+  // For example:
+  //
+  // var a = {
+  //   method1: function() { console.log('a1'); }
+  //   method2: function() { console.log('a2'); }
+  // };
+  // var b = {
+  //   method1: function() { console.log('b1'); }
+  // };
+  // delegateMethod(a, b, "method1");
+  // delegateMethod(a, b, "method2");
+  // a.method1();
+  // a.method2();
+  //
+  // The output would be "b1", "a2".
+  function delegateMethod(delegator, delegatee, methodName) {
+    var inherited = delegator[methodName];
+    delegator[methodName] = function() {
+      var target = delegatee;
+      var method = delegatee[methodName];
+
+      // The method doesn't exist on the delegatee. Instead,
+      // call the method on the delegator, if it exists.
+      if (!method) {
+        target = delegator;
+        method = inherited;
+      }
+
+      if (method) {
+        return method.apply(target, arguments);
+      }
+    };
+  }
+
+  // Implement a vague facsimilie of jQuery's data method
+  function elementData(el, name, value) {
+    if (arguments.length == 2) {
+      return el["htmlwidget_data_" + name];
+    } else if (arguments.length == 3) {
+      el["htmlwidget_data_" + name] = value;
+      return el;
+    } else {
+      throw new Error("Wrong number of arguments for elementData: " +
+        arguments.length);
+    }
+  }
+
+  // http://stackoverflow.com/questions/3446170/escape-string-for-use-in-javascript-regex
+  function escapeRegExp(str) {
+    return str.replace(/[\-\[\]\/\{\}\(\)\*\+\?\.\\\^\$\|]/g, "\\$&");
+  }
+
+  function hasClass(el, className) {
+    var re = new RegExp("\\b" + escapeRegExp(className) + "\\b");
+    return re.test(el.className);
+  }
+
+  // elements - array (or array-like object) of HTML elements
+  // className - class name to test for
+  // include - if true, only return elements with given className;
+  //   if false, only return elements *without* given className
+  function filterByClass(elements, className, include) {
+    var results = [];
+    for (var i = 0; i < elements.length; i++) {
+      if (hasClass(elements[i], className) == include)
+        results.push(elements[i]);
+    }
+    return results;
+  }
+
+  function on(obj, eventName, func) {
+    if (obj.addEventListener) {
+      obj.addEventListener(eventName, func, false);
+    } else if (obj.attachEvent) {
+      obj.attachEvent(eventName, func);
+    }
+  }
+
+  function off(obj, eventName, func) {
+    if (obj.removeEventListener)
+      obj.removeEventListener(eventName, func, false);
+    else if (obj.detachEvent) {
+      obj.detachEvent(eventName, func);
+    }
+  }
+
+  // Translate array of values to top/right/bottom/left, as usual with
+  // the "padding" CSS property
+  // https://developer.mozilla.org/en-US/docs/Web/CSS/padding
+  function unpackPadding(value) {
+    if (typeof(value) === "number")
+      value = [value];
+    if (value.length === 1) {
+      return {top: value[0], right: value[0], bottom: value[0], left: value[0]};
+    }
+    if (value.length === 2) {
+      return {top: value[0], right: value[1], bottom: value[0], left: value[1]};
+    }
+    if (value.length === 3) {
+      return {top: value[0], right: value[1], bottom: value[2], left: value[1]};
+    }
+    if (value.length === 4) {
+      return {top: value[0], right: value[1], bottom: value[2], left: value[3]};
+    }
+  }
+
+  // Convert an unpacked padding object to a CSS value
+  function paddingToCss(paddingObj) {
+    return paddingObj.top + "px " + paddingObj.right + "px " + paddingObj.bottom + "px " + paddingObj.left + "px";
+  }
+
+  // Makes a number suitable for CSS
+  function px(x) {
+    if (typeof(x) === "number")
+      return x + "px";
+    else
+      return x;
+  }
+
+  // Retrieves runtime widget sizing information for an element.
+  // The return value is either null, or an object with fill, padding,
+  // defaultWidth, defaultHeight fields.
+  function sizingPolicy(el) {
+    var sizingEl = document.querySelector("script[data-for='" + el.id + "'][type='application/htmlwidget-sizing']");
+    if (!sizingEl)
+      return null;
+    var sp = JSON.parse(sizingEl.textContent || sizingEl.text || "{}");
+    if (viewerMode) {
+      return sp.viewer;
+    } else {
+      return sp.browser;
+    }
+  }
+
+  // @param tasks Array of strings (or falsy value, in which case no-op).
+  //   Each element must be a valid JavaScript expression that yields a
+  //   function. Or, can be an array of objects with "code" and "data"
+  //   properties; in this case, the "code" property should be a string
+  //   of JS that's an expr that yields a function, and "data" should be
+  //   an object that will be added as an additional argument when that
+  //   function is called.
+  // @param target The object that will be "this" for each function
+  //   execution.
+  // @param args Array of arguments to be passed to the functions. (The
+  //   same arguments will be passed to all functions.)
+  function evalAndRun(tasks, target, args) {
+    if (tasks) {
+      forEach(tasks, function(task) {
+        var theseArgs = args;
+        if (typeof(task) === "object") {
+          theseArgs = theseArgs.concat([task.data]);
+          task = task.code;
+        }
+        var taskFunc = tryEval(task);
+        if (typeof(taskFunc) !== "function") {
+          throw new Error("Task must be a function! Source:\n" + task);
+        }
+        taskFunc.apply(target, theseArgs);
+      });
+    }
+  }
+
+  // Attempt eval() both with and without enclosing in parentheses.
+  // Note that enclosing coerces a function declaration into
+  // an expression that eval() can parse
+  // (otherwise, a SyntaxError is thrown)
+  function tryEval(code) {
+    var result = null;
+    try {
+      result = eval("(" + code + ")");
+    } catch(error) {
+      if (!(error instanceof SyntaxError)) {
+        throw error;
+      }
+      try {
+        result = eval(code);
+      } catch(e) {
+        if (e instanceof SyntaxError) {
+          throw error;
+        } else {
+          throw e;
+        }
+      }
+    }
+    return result;
+  }
+
+  function initSizing(el) {
+    var sizing = sizingPolicy(el);
+    if (!sizing)
+      return;
+
+    var cel = document.getElementById("htmlwidget_container");
+    if (!cel)
+      return;
+
+    if (typeof(sizing.padding) !== "undefined") {
+      document.body.style.margin = "0";
+      document.body.style.padding = paddingToCss(unpackPadding(sizing.padding));
+    }
+
+    if (sizing.fill) {
+      document.body.style.overflow = "hidden";
+      document.body.style.width = "100%";
+      document.body.style.height = "100%";
+      document.documentElement.style.width = "100%";
+      document.documentElement.style.height = "100%";
+      cel.style.position = "absolute";
+      var pad = unpackPadding(sizing.padding);
+      cel.style.top = pad.top + "px";
+      cel.style.right = pad.right + "px";
+      cel.style.bottom = pad.bottom + "px";
+      cel.style.left = pad.left + "px";
+      el.style.width = "100%";
+      el.style.height = "100%";
+
+      return {
+        getWidth: function() { return cel.getBoundingClientRect().width; },
+        getHeight: function() { return cel.getBoundingClientRect().height; }
+      };
+
+    } else {
+      el.style.width = px(sizing.width);
+      el.style.height = px(sizing.height);
+
+      return {
+        getWidth: function() { return cel.getBoundingClientRect().width; },
+        getHeight: function() { return cel.getBoundingClientRect().height; }
+      };
+    }
+  }
+
+  // Default implementations for methods
+  var defaults = {
+    find: function(scope) {
+      return querySelectorAll(scope, "." + this.name);
+    },
+    renderError: function(el, err) {
+      var $el = $(el);
+
+      this.clearError(el);
+
+      // Add all these error classes, as Shiny does
+      var errClass = "shiny-output-error";
+      if (err.type !== null) {
+        // use the classes of the error condition as CSS class names
+        errClass = errClass + " " + $.map(asArray(err.type), function(type) {
+          return errClass + "-" + type;
+        }).join(" ");
+      }
+      errClass = errClass + " htmlwidgets-error";
+
+      // Is el inline or block? If inline or inline-block, just display:none it
+      // and add an inline error.
+      var display = $el.css("display");
+      $el.data("restore-display-mode", display);
+
+      if (display === "inline" || display === "inline-block") {
+        $el.hide();
+        if (err.message !== "") {
+          var errorSpan = $("").addClass(errClass);
+          errorSpan.text(err.message);
+          $el.after(errorSpan);
+        }
+      } else if (display === "block") {
+        // If block, add an error just after the el, set visibility:none on the
+        // el, and position the error to be on top of the el.
+        // Mark it with a unique ID and CSS class so we can remove it later.
+        $el.css("visibility", "hidden");
+        if (err.message !== "") {
+          var errorDiv = $("
").addClass(errClass).css("position", "absolute")
+            .css("top", el.offsetTop)
+            .css("left", el.offsetLeft)
+            // setting width can push out the page size, forcing otherwise
+            // unnecessary scrollbars to appear and making it impossible for
+            // the element to shrink; so use max-width instead
+            .css("maxWidth", el.offsetWidth)
+            .css("height", el.offsetHeight);
+          errorDiv.text(err.message);
+          $el.after(errorDiv);
+
+          // Really dumb way to keep the size/position of the error in sync with
+          // the parent element as the window is resized or whatever.
+          var intId = setInterval(function() {
+            if (!errorDiv[0].parentElement) {
+              clearInterval(intId);
+              return;
+            }
+            errorDiv
+              .css("top", el.offsetTop)
+              .css("left", el.offsetLeft)
+              .css("maxWidth", el.offsetWidth)
+              .css("height", el.offsetHeight);
+          }, 500);
+        }
+      }
+    },
+    clearError: function(el) {
+      var $el = $(el);
+      var display = $el.data("restore-display-mode");
+      $el.data("restore-display-mode", null);
+
+      if (display === "inline" || display === "inline-block") {
+        if (display)
+          $el.css("display", display);
+        $(el.nextSibling).filter(".htmlwidgets-error").remove();
+      } else if (display === "block"){
+        $el.css("visibility", "inherit");
+        $(el.nextSibling).filter(".htmlwidgets-error").remove();
+      }
+    },
+    sizing: {}
+  };
+
+  // Called by widget bindings to register a new type of widget. The definition
+  // object can contain the following properties:
+  // - name (required) - A string indicating the binding name, which will be
+  //   used by default as the CSS classname to look for.
+  // - initialize (optional) - A function(el) that will be called once per
+  //   widget element; if a value is returned, it will be passed as the third
+  //   value to renderValue.
+  // - renderValue (required) - A function(el, data, initValue) that will be
+  //   called with data. Static contexts will cause this to be called once per
+  //   element; Shiny apps will cause this to be called multiple times per
+  //   element, as the data changes.
+  window.HTMLWidgets.widget = function(definition) {
+    if (!definition.name) {
+      throw new Error("Widget must have a name");
+    }
+    if (!definition.type) {
+      throw new Error("Widget must have a type");
+    }
+    // Currently we only support output widgets
+    if (definition.type !== "output") {
+      throw new Error("Unrecognized widget type '" + definition.type + "'");
+    }
+    // TODO: Verify that .name is a valid CSS classname
+
+    // Support new-style instance-bound definitions. Old-style class-bound
+    // definitions have one widget "object" per widget per type/class of
+    // widget; the renderValue and resize methods on such widget objects
+    // take el and instance arguments, because the widget object can't
+    // store them. New-style instance-bound definitions have one widget
+    // object per widget instance; the definition that's passed in doesn't
+    // provide renderValue or resize methods at all, just the single method
+    //   factory(el, width, height)
+    // which returns an object that has renderValue(x) and resize(w, h).
+    // This enables a far more natural programming style for the widget
+    // author, who can store per-instance state using either OO-style
+    // instance fields or functional-style closure variables (I guess this
+    // is in contrast to what can only be called C-style pseudo-OO which is
+    // what we required before).
+    if (definition.factory) {
+      definition = createLegacyDefinitionAdapter(definition);
+    }
+
+    if (!definition.renderValue) {
+      throw new Error("Widget must have a renderValue function");
+    }
+
+    // For static rendering (non-Shiny), use a simple widget registration
+    // scheme. We also use this scheme for Shiny apps/documents that also
+    // contain static widgets.
+    window.HTMLWidgets.widgets = window.HTMLWidgets.widgets || [];
+    // Merge defaults into the definition; don't mutate the original definition.
+    var staticBinding = extend({}, defaults, definition);
+    overrideMethod(staticBinding, "find", function(superfunc) {
+      return function(scope) {
+        var results = superfunc(scope);
+        // Filter out Shiny outputs, we only want the static kind
+        return filterByClass(results, "html-widget-output", false);
+      };
+    });
+    window.HTMLWidgets.widgets.push(staticBinding);
+
+    if (shinyMode) {
+      // Shiny is running. Register the definition with an output binding.
+      // The definition itself will not be the output binding, instead
+      // we will make an output binding object that delegates to the
+      // definition. This is because we foolishly used the same method
+      // name (renderValue) for htmlwidgets definition and Shiny bindings
+      // but they actually have quite different semantics (the Shiny
+      // bindings receive data that includes lots of metadata that it
+      // strips off before calling htmlwidgets renderValue). We can't
+      // just ignore the difference because in some widgets it's helpful
+      // to call this.renderValue() from inside of resize(), and if
+      // we're not delegating, then that call will go to the Shiny
+      // version instead of the htmlwidgets version.
+
+      // Merge defaults with definition, without mutating either.
+      var bindingDef = extend({}, defaults, definition);
+
+      // This object will be our actual Shiny binding.
+      var shinyBinding = new Shiny.OutputBinding();
+
+      // With a few exceptions, we'll want to simply use the bindingDef's
+      // version of methods if they are available, otherwise fall back to
+      // Shiny's defaults. NOTE: If Shiny's output bindings gain additional
+      // methods in the future, and we want them to be overrideable by
+      // HTMLWidget binding definitions, then we'll need to add them to this
+      // list.
+      delegateMethod(shinyBinding, bindingDef, "getId");
+      delegateMethod(shinyBinding, bindingDef, "onValueChange");
+      delegateMethod(shinyBinding, bindingDef, "onValueError");
+      delegateMethod(shinyBinding, bindingDef, "renderError");
+      delegateMethod(shinyBinding, bindingDef, "clearError");
+      delegateMethod(shinyBinding, bindingDef, "showProgress");
+
+      // The find, renderValue, and resize are handled differently, because we
+      // want to actually decorate the behavior of the bindingDef methods.
+
+      shinyBinding.find = function(scope) {
+        var results = bindingDef.find(scope);
+
+        // Only return elements that are Shiny outputs, not static ones
+        var dynamicResults = results.filter(".html-widget-output");
+
+        // It's possible that whatever caused Shiny to think there might be
+        // new dynamic outputs, also caused there to be new static outputs.
+        // Since there might be lots of different htmlwidgets bindings, we
+        // schedule execution for later--no need to staticRender multiple
+        // times.
+        if (results.length !== dynamicResults.length)
+          scheduleStaticRender();
+
+        return dynamicResults;
+      };
+
+      // Wrap renderValue to handle initialization, which unfortunately isn't
+      // supported natively by Shiny at the time of this writing.
+
+      shinyBinding.renderValue = function(el, data) {
+        Shiny.renderDependencies(data.deps);
+        // Resolve strings marked as javascript literals to objects
+        if (!(data.evals instanceof Array)) data.evals = [data.evals];
+        for (var i = 0; data.evals && i < data.evals.length; i++) {
+          window.HTMLWidgets.evaluateStringMember(data.x, data.evals[i]);
+        }
+        if (!bindingDef.renderOnNullValue) {
+          if (data.x === null) {
+            el.style.visibility = "hidden";
+            return;
+          } else {
+            el.style.visibility = "inherit";
+          }
+        }
+        if (!elementData(el, "initialized")) {
+          initSizing(el);
+
+          elementData(el, "initialized", true);
+          if (bindingDef.initialize) {
+            var rect = el.getBoundingClientRect();
+            var result = bindingDef.initialize(el, rect.width, rect.height);
+            elementData(el, "init_result", result);
+          }
+        }
+        bindingDef.renderValue(el, data.x, elementData(el, "init_result"));
+        evalAndRun(data.jsHooks.render, elementData(el, "init_result"), [el, data.x]);
+      };
+
+      // Only override resize if bindingDef implements it
+      if (bindingDef.resize) {
+        shinyBinding.resize = function(el, width, height) {
+          // Shiny can call resize before initialize/renderValue have been
+          // called, which doesn't make sense for widgets.
+          if (elementData(el, "initialized")) {
+            bindingDef.resize(el, width, height, elementData(el, "init_result"));
+          }
+        };
+      }
+
+      Shiny.outputBindings.register(shinyBinding, bindingDef.name);
+    }
+  };
+
+  var scheduleStaticRenderTimerId = null;
+  function scheduleStaticRender() {
+    if (!scheduleStaticRenderTimerId) {
+      scheduleStaticRenderTimerId = setTimeout(function() {
+        scheduleStaticRenderTimerId = null;
+        window.HTMLWidgets.staticRender();
+      }, 1);
+    }
+  }
+
+  // Render static widgets after the document finishes loading
+  // Statically render all elements that are of this widget's class
+  window.HTMLWidgets.staticRender = function() {
+    var bindings = window.HTMLWidgets.widgets || [];
+    forEach(bindings, function(binding) {
+      var matches = binding.find(document.documentElement);
+      forEach(matches, function(el) {
+        var sizeObj = initSizing(el, binding);
+
+        var getSize = function(el) {
+          if (sizeObj) {
+            return {w: sizeObj.getWidth(), h: sizeObj.getHeight()}
+          } else {
+            var rect = el.getBoundingClientRect();
+            return {w: rect.width, h: rect.height}
+          }
+        };
+
+        if (hasClass(el, "html-widget-static-bound"))
+          return;
+        el.className = el.className + " html-widget-static-bound";
+
+        var initResult;
+        if (binding.initialize) {
+          var size = getSize(el);
+          initResult = binding.initialize(el, size.w, size.h);
+          elementData(el, "init_result", initResult);
+        }
+
+        if (binding.resize) {
+          var lastSize = getSize(el);
+          var resizeHandler = function(e) {
+            var size = getSize(el);
+            if (size.w === 0 && size.h === 0)
+              return;
+            if (size.w === lastSize.w && size.h === lastSize.h)
+              return;
+            lastSize = size;
+            binding.resize(el, size.w, size.h, initResult);
+          };
+
+          on(window, "resize", resizeHandler);
+
+          // This is needed for cases where we're running in a Shiny
+          // app, but the widget itself is not a Shiny output, but
+          // rather a simple static widget. One example of this is
+          // an rmarkdown document that has runtime:shiny and widget
+          // that isn't in a render function. Shiny only knows to
+          // call resize handlers for Shiny outputs, not for static
+          // widgets, so we do it ourselves.
+          if (window.jQuery) {
+            window.jQuery(document).on(
+              "shown.htmlwidgets shown.bs.tab.htmlwidgets shown.bs.collapse.htmlwidgets",
+              resizeHandler
+            );
+            window.jQuery(document).on(
+              "hidden.htmlwidgets hidden.bs.tab.htmlwidgets hidden.bs.collapse.htmlwidgets",
+              resizeHandler
+            );
+          }
+
+          // This is needed for the specific case of ioslides, which
+          // flips slides between display:none and display:block.
+          // Ideally we would not have to have ioslide-specific code
+          // here, but rather have ioslides raise a generic event,
+          // but the rmarkdown package just went to CRAN so the
+          // window to getting that fixed may be long.
+          if (window.addEventListener) {
+            // It's OK to limit this to window.addEventListener
+            // browsers because ioslides itself only supports
+            // such browsers.
+            on(document, "slideenter", resizeHandler);
+            on(document, "slideleave", resizeHandler);
+          }
+        }
+
+        var scriptData = document.querySelector("script[data-for='" + el.id + "'][type='application/json']");
+        if (scriptData) {
+          var data = JSON.parse(scriptData.textContent || scriptData.text);
+          // Resolve strings marked as javascript literals to objects
+          if (!(data.evals instanceof Array)) data.evals = [data.evals];
+          for (var k = 0; data.evals && k < data.evals.length; k++) {
+            window.HTMLWidgets.evaluateStringMember(data.x, data.evals[k]);
+          }
+          binding.renderValue(el, data.x, initResult);
+          evalAndRun(data.jsHooks.render, initResult, [el, data.x]);
+        }
+      });
+    });
+
+    invokePostRenderHandlers();
+  }
+
+
+  function has_jQuery3() {
+    if (!window.jQuery) {
+      return false;
+    }
+    var $version = window.jQuery.fn.jquery;
+    var $major_version = parseInt($version.split(".")[0]);
+    return $major_version >= 3;
+  }
+
+  /*
+  / Shiny 1.4 bumped jQuery from 1.x to 3.x which means jQuery's
+  / on-ready handler (i.e., $(fn)) is now asyncronous (i.e., it now
+  / really means $(setTimeout(fn)).
+  / https://jquery.com/upgrade-guide/3.0/#breaking-change-document-ready-handlers-are-now-asynchronous
+  /
+  / Since Shiny uses $() to schedule initShiny, shiny>=1.4 calls initShiny
+  / one tick later than it did before, which means staticRender() is
+  / called renderValue() earlier than (advanced) widget authors might be expecting.
+  / https://github.com/rstudio/shiny/issues/2630
+  /
+  / For a concrete example, leaflet has some methods (e.g., updateBounds)
+  / which reference Shiny methods registered in initShiny (e.g., setInputValue).
+  / Since leaflet is privy to this life-cycle, it knows to use setTimeout() to
+  / delay execution of those methods (until Shiny methods are ready)
+  / https://github.com/rstudio/leaflet/blob/18ec981/javascript/src/index.js#L266-L268
+  /
+  / Ideally widget authors wouldn't need to use this setTimeout() hack that
+  / leaflet uses to call Shiny methods on a staticRender(). In the long run,
+  / the logic initShiny should be broken up so that method registration happens
+  / right away, but binding happens later.
+  */
+  function maybeStaticRenderLater() {
+    if (shinyMode && has_jQuery3()) {
+      window.jQuery(window.HTMLWidgets.staticRender);
+    } else {
+      window.HTMLWidgets.staticRender();
+    }
+  }
+
+  if (document.addEventListener) {
+    document.addEventListener("DOMContentLoaded", function() {
+      document.removeEventListener("DOMContentLoaded", arguments.callee, false);
+      maybeStaticRenderLater();
+    }, false);
+  } else if (document.attachEvent) {
+    document.attachEvent("onreadystatechange", function() {
+      if (document.readyState === "complete") {
+        document.detachEvent("onreadystatechange", arguments.callee);
+        maybeStaticRenderLater();
+      }
+    });
+  }
+
+
+  window.HTMLWidgets.getAttachmentUrl = function(depname, key) {
+    // If no key, default to the first item
+    if (typeof(key) === "undefined")
+      key = 1;
+
+    var link = document.getElementById(depname + "-" + key + "-attachment");
+    if (!link) {
+      throw new Error("Attachment " + depname + "/" + key + " not found in document");
+    }
+    return link.getAttribute("href");
+  };
+
+  window.HTMLWidgets.dataframeToD3 = function(df) {
+    var names = [];
+    var length;
+    for (var name in df) {
+        if (df.hasOwnProperty(name))
+            names.push(name);
+        if (typeof(df[name]) !== "object" || typeof(df[name].length) === "undefined") {
+            throw new Error("All fields must be arrays");
+        } else if (typeof(length) !== "undefined" && length !== df[name].length) {
+            throw new Error("All fields must be arrays of the same length");
+        }
+        length = df[name].length;
+    }
+    var results = [];
+    var item;
+    for (var row = 0; row < length; row++) {
+        item = {};
+        for (var col = 0; col < names.length; col++) {
+            item[names[col]] = df[names[col]][row];
+        }
+        results.push(item);
+    }
+    return results;
+  };
+
+  window.HTMLWidgets.transposeArray2D = function(array) {
+      if (array.length === 0) return array;
+      var newArray = array[0].map(function(col, i) {
+          return array.map(function(row) {
+              return row[i]
+          })
+      });
+      return newArray;
+  };
+  // Split value at splitChar, but allow splitChar to be escaped
+  // using escapeChar. Any other characters escaped by escapeChar
+  // will be included as usual (including escapeChar itself).
+  function splitWithEscape(value, splitChar, escapeChar) {
+    var results = [];
+    var escapeMode = false;
+    var currentResult = "";
+    for (var pos = 0; pos < value.length; pos++) {
+      if (!escapeMode) {
+        if (value[pos] === splitChar) {
+          results.push(currentResult);
+          currentResult = "";
+        } else if (value[pos] === escapeChar) {
+          escapeMode = true;
+        } else {
+          currentResult += value[pos];
+        }
+      } else {
+        currentResult += value[pos];
+        escapeMode = false;
+      }
+    }
+    if (currentResult !== "") {
+      results.push(currentResult);
+    }
+    return results;
+  }
+  // Function authored by Yihui/JJ Allaire
+  window.HTMLWidgets.evaluateStringMember = function(o, member) {
+    var parts = splitWithEscape(member, '.', '\\');
+    for (var i = 0, l = parts.length; i < l; i++) {
+      var part = parts[i];
+      // part may be a character or 'numeric' member name
+      if (o !== null && typeof o === "object" && part in o) {
+        if (i == (l - 1)) { // if we are at the end of the line then evalulate
+          if (typeof o[part] === "string")
+            o[part] = tryEval(o[part]);
+        } else { // otherwise continue to next embedded object
+          o = o[part];
+        }
+      }
+    }
+  };
+
+  // Retrieve the HTMLWidget instance (i.e. the return value of an
+  // HTMLWidget binding's initialize() or factory() function)
+  // associated with an element, or null if none.
+  window.HTMLWidgets.getInstance = function(el) {
+    return elementData(el, "init_result");
+  };
+
+  // Finds the first element in the scope that matches the selector,
+  // and returns the HTMLWidget instance (i.e. the return value of
+  // an HTMLWidget binding's initialize() or factory() function)
+  // associated with that element, if any. If no element matches the
+  // selector, or the first matching element has no HTMLWidget
+  // instance associated with it, then null is returned.
+  //
+  // The scope argument is optional, and defaults to window.document.
+  window.HTMLWidgets.find = function(scope, selector) {
+    if (arguments.length == 1) {
+      selector = scope;
+      scope = document;
+    }
+
+    var el = scope.querySelector(selector);
+    if (el === null) {
+      return null;
+    } else {
+      return window.HTMLWidgets.getInstance(el);
+    }
+  };
+
+  // Finds all elements in the scope that match the selector, and
+  // returns the HTMLWidget instances (i.e. the return values of
+  // an HTMLWidget binding's initialize() or factory() function)
+  // associated with the elements, in an array. If elements that
+  // match the selector don't have an associated HTMLWidget
+  // instance, the returned array will contain nulls.
+  //
+  // The scope argument is optional, and defaults to window.document.
+  window.HTMLWidgets.findAll = function(scope, selector) {
+    if (arguments.length == 1) {
+      selector = scope;
+      scope = document;
+    }
+
+    var nodes = scope.querySelectorAll(selector);
+    var results = [];
+    for (var i = 0; i < nodes.length; i++) {
+      results.push(window.HTMLWidgets.getInstance(nodes[i]));
+    }
+    return results;
+  };
+
+  var postRenderHandlers = [];
+  function invokePostRenderHandlers() {
+    while (postRenderHandlers.length) {
+      var handler = postRenderHandlers.shift();
+      if (handler) {
+        handler();
+      }
+    }
+  }
+
+  // Register the given callback function to be invoked after the
+  // next time static widgets are rendered.
+  window.HTMLWidgets.addPostRenderHandler = function(callback) {
+    postRenderHandlers.push(callback);
+  };
+
+  // Takes a new-style instance-bound definition, and returns an
+  // old-style class-bound definition. This saves us from having
+  // to rewrite all the logic in this file to accomodate both
+  // types of definitions.
+  function createLegacyDefinitionAdapter(defn) {
+    var result = {
+      name: defn.name,
+      type: defn.type,
+      initialize: function(el, width, height) {
+        return defn.factory(el, width, height);
+      },
+      renderValue: function(el, x, instance) {
+        return instance.renderValue(x);
+      },
+      resize: function(el, width, height, instance) {
+        return instance.resize(width, height);
+      }
+    };
+
+    if (defn.find)
+      result.find = defn.find;
+    if (defn.renderError)
+      result.renderError = defn.renderError;
+    if (defn.clearError)
+      result.clearError = defn.clearError;
+
+    return result;
+  }
+})();
diff --git a/reference/modelStudio.html b/reference/modelStudio.html
index ff9456b..2596fc2 100644
--- a/reference/modelStudio.html
+++ b/reference/modelStudio.html
@@ -310,10 +310,10 @@ 
Examples

 #>   -> target variable   :  2207  values 
 #>   -> predict function  :  yhat.glm  will be used (  default  )
 #>   -> predicted values  :  No value for predict function target column. (  default  )
-#>   -> model_info        :  package stats , ver. 4.2.2 , task classification (  default  ) 
+#>   -> model_info        :  package stats , ver. 4.3.1 , task classification (  default  ) 
 #>   -> predicted values  :  numerical, min =  0.008128381 , mean =  0.3221568 , max =  0.9731431  
 #>   -> residual function :  difference between y and yhat (  default  )
-#>   -> residuals         :  numerical, min =  -0.9628583 , mean =  -2.569729e-10 , max =  0.9663346  
+#>   -> residuals         :  numerical, min =  -0.9628583 , mean =  -2.569721e-10 , max =  0.9663346  
 #>   A new explainer has been created!  
 
 # pick observations
@@ -324,8 +324,8 @@ 
Examples

 modelStudio(explainer_titanic,
             new_observations,
             N = 200,  B = 5) # faster example
-

-
+

+
 # \donttest{
 
 #:# ex2 regression on 'apartments' data
@@ -361,14 +361,14 @@ 
Examples

 #>   -> target variable   :  1000  values 
 #>   -> predict function  :  yhat.ranger  will be used (  default  )
 #>   -> predicted values  :  No value for predict function target column. (  default  )
-#>   -> model_info        :  package ranger , ver. 0.14.1 , task regression (  default  ) 
-#>   -> predicted values  :  numerical, min =  1860.257 , mean =  3488.655 , max =  6213.505  
+#>   -> model_info        :  package ranger , ver. 0.15.1 , task regression (  default  ) 
+#>   -> predicted values  :  numerical, min =  1875.133 , mean =  3488.807 , max =  6156.895  
 #>   -> residual function :  difference between y and yhat (  default  )
-#>   -> residuals         :  numerical, min =  -459.0929 , mean =  -1.635668 , max =  553.7906  
+#>   -> residuals         :  numerical, min =  -427.7674 , mean =  -1.787996 , max =  601.5277  
 #>   A new explainer has been created!  
 #> `new_observation` argument is NULL. `new_observation_n` observations needed to calculate local explanations are taken from the data.
-

-
+

+
 #:# ex3 xgboost model on 'HR' dataset
 if (requireNamespace("xgboost", quietly=TRUE)) {
   library("xgboost")
@@ -405,10 +405,10 @@ 
Examples

 #>   -> model_info        :  Model info detected classification task but 'y' is a logical . Converted to numeric.  (  NOTE  )
 #>   -> predicted values  :  numerical, min =  1.158531e-06 , mean =  0.36388 , max =  0.9997931  
 #>   -> residual function :  difference between y and yhat (  default  )
-#>   -> residuals         :  numerical, min =  -0.9830738 , mean =  -4.673149e-05 , max =  0.9703595  
+#>   -> residuals         :  numerical, min =  -0.9830738 , mean =  -4.673041e-05 , max =  0.9703595  
 #>   A new explainer has been created!  
-

-# }
+

+# }

diff --git a/reference/ms_merge_observations.html b/reference/ms_merge_observations.html index b326cb9..8e8b104 100644 --- a/reference/ms_merge_observations.html +++ b/reference/ms_merge_observations.html @@ -126,7 +126,7 @@

Examples

#> -> target variable : 156 values #> -> predict function : yhat.glm will be used ( default ) #> -> predicted values : No value for predict function target column. ( default ) -#> -> model_info : package stats , ver. 4.2.2 , task regression ( default ) +#> -> model_info : package stats , ver. 4.3.1 , task regression ( default ) #> -> predicted values : numerical, min = 2.726257 , mean = 5.553508 , max = 7.560368 #> -> residual function : difference between y and yhat ( default ) #> -> residuals : numerical, min = -1.976856 , mean = -0.1464115 , max = 0.9116971 @@ -144,8 +144,8 @@

Examples

# merge ms <- ms_merge_observations(ms1, ms2) ms -
-# } +
+# } diff --git a/reference/ms_options.html b/reference/ms_options.html index 48a53ef..cdbf814 100644 --- a/reference/ms_options.html +++ b/reference/ms_options.html @@ -222,10 +222,10 @@

Examples

#> -> target variable : 1000 values #> -> predict function : yhat.glm will be used ( default ) #> -> predicted values : No value for predict function target column. ( default ) -#> -> model_info : package stats , ver. 4.2.2 , task regression ( default ) +#> -> model_info : package stats , ver. 4.3.1 , task regression ( default ) #> -> predicted values : numerical, min = 1781.848 , mean = 3487.019 , max = 6176.032 #> -> residual function : difference between y and yhat ( default ) -#> -> residuals : numerical, min = -247.4728 , mean = 2.093656e-14 , max = 469.0023 +#> -> residuals : numerical, min = -247.4728 , mean = 1.635062e-13 , max = 469.0023 #> A new explainer has been created! # pick observations @@ -249,8 +249,8 @@

Examples

new_observation, options = new_options, N = 200, B = 5) # faster example -
- +
+ diff --git a/reference/ms_update_observations.html b/reference/ms_update_observations.html index 84ed53c..07ccaa1 100644 --- a/reference/ms_update_observations.html +++ b/reference/ms_update_observations.html @@ -187,10 +187,10 @@

Examples

#> -> target variable : 2207 values #> -> predict function : yhat.glm will be used ( default ) #> -> predicted values : No value for predict function target column. ( default ) -#> -> model_info : package stats , ver. 4.2.2 , task classification ( default ) +#> -> model_info : package stats , ver. 4.3.1 , task classification ( default ) #> -> predicted values : numerical, min = 0.008128381 , mean = 0.3221568 , max = 0.9731431 #> -> residual function : difference between y and yhat ( default ) -#> -> residuals : numerical, min = -0.9628583 , mean = -2.569729e-10 , max = 0.9663346 +#> -> residuals : numerical, min = -0.9628583 , mean = -2.569721e-10 , max = 0.9663346 #> A new explainer has been created! # make a studio for the model @@ -206,8 +206,8 @@

Examples

new_observation = titanic_imputed[100:101,], new_observation_y = titanic_imputed$survived[100:101]) ms -
- +
+ # overwrite the observations with new ones @@ -216,8 +216,8 @@

Examples

new_observation = titanic_imputed[100:101,], overwrite = TRUE) ms -
- +
+ # } diff --git a/reference/ms_update_options.html b/reference/ms_update_options.html index c0b4c10..f6891ed 100644 --- a/reference/ms_update_options.html +++ b/reference/ms_update_options.html @@ -223,10 +223,10 @@

Examples

#> -> target variable : 2207 values #> -> predict function : yhat.glm will be used ( default ) #> -> predicted values : No value for predict function target column. ( default ) -#> -> model_info : package stats , ver. 4.2.2 , task classification ( default ) +#> -> model_info : package stats , ver. 4.3.1 , task classification ( default ) #> -> predicted values : numerical, min = 0.008128381 , mean = 0.3221568 , max = 0.9731431 #> -> residual function : difference between y and yhat ( default ) -#> -> residuals : numerical, min = -0.9628583 , mean = -2.569729e-10 , max = 0.9663346 +#> -> residuals : numerical, min = -0.9628583 , mean = -2.569721e-10 , max = 0.9663346 #> A new explainer has been created! # make a studio for the model @@ -240,8 +240,8 @@

Examples

facet_dim = c(1,2), margin_left = 150) new_ms -
- +
+