From 1df7d2636e65209c97cb362a6ffa39c9618a4379 Mon Sep 17 00:00:00 2001 From: mrustl Date: Mon, 9 Sep 2019 10:36:27 +0200 Subject: [PATCH 1/7] adapt to new pkgdown v1.4 workflow see: https://github.com/r-lib/pkgdown/issues/1136 and also deploy :book: from "dev" branch --- .Rbuildignore | 4 ++-- .travis.yml | 12 ++++++++++++ index.Rmd => index.md | 2 +- 3 files changed, 15 insertions(+), 3 deletions(-) rename index.Rmd => index.md (96%) diff --git a/.Rbuildignore b/.Rbuildignore index 67e6d44..0eb295b 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -7,9 +7,9 @@ ^\.RData$ ^\.Rproj\.user$ ^\.here$ -^.travis\.yml$ +^\.travis\.yml$ ^.gitlab-ci\.yml$ ^appveyor\.yml$ -^index\.Rmd$ +^index\.md$ ^README\.md$ ^R/\.setup\.R diff --git a/.travis.yml b/.travis.yml index 9890d75..9f30333 100644 --- a/.travis.yml +++ b/.travis.yml @@ -1,3 +1,11 @@ +############################################################################## +### Autogenerated with R package kwb.pkgbuild v0.1.1 +### (installed from 'Github (kwb-r/kwb.pkgbuild@0ac3694)' source code on 2019-09-06) +### by calling the function kwb.pkgbuild::use_travis() +### (file created at: 2019-09-09 10:34:55) +############################################################################## + + language: r sudo: required cache: packages @@ -16,4 +24,8 @@ matrix: provider: script script: Rscript -e 'pkgdown::deploy_site_github(verbose = TRUE)' skip_cleanup: 'true' + on: + branch: + - master + - dev - r: oldrel diff --git a/index.Rmd b/index.md similarity index 96% rename from index.Rmd rename to index.md index fb897e4..5e92dc8 100644 --- a/index.Rmd +++ b/index.md @@ -9,7 +9,7 @@ Helper Functions For Analysing KWB Endnote Library ## Installation -```{r echo = TRUE, eval = FALSE} +```r #install.packages("remotes", repos = "https://cloud.r-project.org") remotes::install_github("KWB-R/kwb.endnote") ``` From 266d878286ffee6d79940f064412c26033eacc9f Mon Sep 17 00:00:00 2001 From: mrustl Date: Thu, 26 Sep 2019 14:17:39 +0200 Subject: [PATCH 2/7] Fix link to "project-identifier" in fakin.doc --- vignettes/analyse-endnote.Rmd | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/vignettes/analyse-endnote.Rmd b/vignettes/analyse-endnote.Rmd index 467b69e..122a156 100644 --- a/vignettes/analyse-endnote.Rmd +++ b/vignettes/analyse-endnote.Rmd @@ -211,8 +211,9 @@ In total `r percent_pubs_with_project_meta` percent (i.e. contain meta-information on the project. However, the spelling of project names does not follow a controlled vocabulary yet as can be seen in the table above. -Thus it is recommended to establish a controlled vocabulary for [project acroyms](https://kwb-r.github.io/fakin.doc/best-practices.html#acronyms) -according to the best-practices defined in the FAKIN project (see [here](https://kwb-r.github.io/fakin.doc/best-practices.html#acronyms)) +Thus it is recommended to establish a controlled vocabulary for [project identifiers](https://kwb-r.github.io/fakin.doc/qms.html#project-identifier) +according to the best-practices defined in the FAKIN project (see +[here](https://kwb-r.github.io/fakin.doc/best-practices.html#acronyms)). ## By Author From 529acabae4d72909eeb1d3aaee0efd566aaefc43 Mon Sep 17 00:00:00 2001 From: mrustl Date: Thu, 26 Sep 2019 14:28:51 +0200 Subject: [PATCH 3/7] Use latest changes in KWB_documents (2019-07-09) --- R/check_for_differences.R | 4 ++-- R/helper.R | 2 +- inst/extdata/2019-01-14_KWB_documents.xml | 1 - inst/extdata/2019-07-09_KWB_documents.xml | 1 + vignettes/workflow.Rmd | 8 +++++--- 5 files changed, 9 insertions(+), 7 deletions(-) delete mode 100644 inst/extdata/2019-01-14_KWB_documents.xml create mode 100644 inst/extdata/2019-07-09_KWB_documents.xml diff --git a/R/check_for_differences.R b/R/check_for_differences.R index ce2a7ff..6fb860c 100644 --- a/R/check_for_differences.R +++ b/R/check_for_differences.R @@ -17,8 +17,8 @@ #' ### Check differences between two different versions of "KWB_documents.xml" #' ############################################################################ #' -#' old_xml <- extdata_file("2019-01-07_KWB_documents.xml") -#' new_xml <- extdata_file("2019-01-14_KWB_documents.xml") +#' old_xml <- extdata_file("2019-01-14_KWB_documents.xml") +#' new_xml <- extdata_file("2019-07-09_KWB_documents.xml") #' old_list <- kwb.endnote::create_endnote_list(old_xml) #' new_list <- kwb.endnote::create_endnote_list(new_xml) #' old_df <- kwb.endnote::create_references_df(old_list) diff --git a/R/helper.R b/R/helper.R index 8d10894..f464845 100644 --- a/R/helper.R +++ b/R/helper.R @@ -20,7 +20,7 @@ colname_i <- function(name, i) { #' @export #' default_xml <- function() { - extdata_file("2019-01-07_KWB_documents.xml") + extdata_file("2019-07-09_KWB_documents.xml") } # first_of_element ------------------------------------------------------------- diff --git a/inst/extdata/2019-01-14_KWB_documents.xml b/inst/extdata/2019-01-14_KWB_documents.xml deleted file mode 100644 index aeb1efa..0000000 --- a/inst/extdata/2019-01-14_KWB_documents.xml +++ /dev/null @@ -1 +0,0 @@ -KWB documents.enlEndNote86586517<style face="normal" font="default" size="100%">Inventory of Managed Aquifer Recharge sites in Europe – historical development, current situation and perspectives</style>internal-pdf://3302492098/SWAM-S-15-00219-2.pdfKWB documents.enlEndNote8768765<style face="normal" font="default" size="100%">Numerical and analytical models for natural water treatment systems in the Indian context </style>
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internal-pdf://Gruenheid et al - 2005 --0063362816/Gruenheid et al - 2005 - Removal of bulk dissolved organic carbon (DOC) and trace organic compounds by bank filtration and artificial recharge.pdfKWB documents.enlEndNote979717<style face="normal" font="default" size="100%">Modeling of carbon cycling and biogeochemical changes during injection and recovery of reclaimed water at Bolivar, South Australia</style>internal-pdf://Greskowiak et al - Water Resources Research 2005 - Modeling of-1219109120/Greskowiak et al - Water Resources Research 2005 - Modeling of carbon cycling and biogeochemical changes.pdfKWB documents.enlEndNote11711717<style face="normal" font="default" size="100%">The impact of variably saturated conditions on hydrogeochemical changes during artificial recharge of groundwater</style>
internal-pdf://Greskowiak et al - 2005 - T-3351554816/Greskowiak et al - 2005 - The impact of variably saturated conditions on hydrogeochemical changes during artificial recharge of groundwater.pdfKWB documents.enlEndNote565647<style face="normal" font="default" size="100%">Planung und Bau einer Membranbelebungsanlage für die semizentrale Erschließung eines Siedlungsgebietes in einem empfindlichen Gebiet</style>internal-pdf://Gnirss, 2005 --3716376065/Gnirss, 2005 - Planung und Bau einer Membranbelebungsanlage für die semizentrale Erschließung eines Siedlungsgebietes in einem empfindlichen Gebiet, 17p.pdfKWB documents.enlEndNote929247<style face="normal" font="default" size="100%">Transport and attenuation of antibiotic residues during river bank filtration in Berlin, Germany</style>internal-pdf://Fanck, B., Heberer, Th. - ISMAR-2036403968/Fanck, B., Heberer, Th. - ISMAR 2005 - Transport and attenuation of antibiotic residues during river bank filtration in Berlin, Germany.pdfKWB documents.enlEndNote26226217<style face="normal" font="default" size="100%">Fouling in Membranbelebungsreaktoren: Erfahrungen beim Betrieb mit diskontinuierlichem Schlammabzug</style>internal-pdf://Drews_CIT_2005-1046606849/Drews_CIT_2005.pdfKWB documents.enlEndNote32732747<style face="normal" font="default" size="100%">Pilot scale ozonation of treated municipal effluent for removal of pharmaceutical compopunds and pathogens</style>internal-pdf://IOA17_Paper_VI 2 6_Pilotox-2249062657/IOA17_Paper_VI 2 6_Pilotox.pdfKWB documents.enlEndNote14714717<style face="normal" font="default" size="100%">Analysis of endocrine disrupting steroids: Investigation of their release into the environment and their behavior during bank filtration</style>
internal-pdf://Wiese et al - 2007 - Inverse Modelling of Aquitard Structures using-3122414337/Wiese et al - 2007 - Inverse Modelling of Aquitard Structures using Pilot Points and Regularisation.pdfKWB documents.enlEndNote14214247<style face="normal" font="default" size="100%">Assessment of bank filtration pumping regimes on flow length and travel times: a case study</style>internal-pdf://Wiese et al - 2004 - Assessment of bank filtration pump-2014890241/Wiese et al - 2004 - Assessment of bank filtration pumping regimes on flow length and travel times a case study.pdfKWB documents.enlEndNote14314317<style face="normal" font="default" size="100%">Assessing the Effect of Pumping Regimes on Bank Filtration</style>
internal-pdf://Wiese et al_IGB Jahresforschungsbericht 2003_2004-3323349761/Wiese et al_IGB Jahresforschungsbericht 2003_2004.pdfKWB documents.enlEndNote535327<style face="normal" font="default" size="100%">Progress Report 2004 - Preliminary investigations for the Margaretenhöhe MBR demonstration plant</style>internal-pdf://Vocks et al., 2004 - Progress Report 2004 - Margaretenhöhe MBR demo-2339693056/Vocks et al., 2004 - Progress Report 2004 - Margaretenhöhe MBR demonstration plant (ENREM), 26p.pdfKWB documents.enlEndNote212147<style face="normal" font="default" size="100%">Integrated Sewage Management - Development of a global Real Time Control for three interconnected Subcatchments of the Berlin Drainage System</style>internal-pdf://S-4238110976/Schroeder et al, 2004 - Integrated Sewage Management - Development of a global Real Time Control for three interconnected Subcatchments of the Berlin Drainage System.PDFKWB documents.enlEndNote161617<style face="normal" font="default" size="100%">Integriertes Abwassermanagement - Strategien für eine integrierte Bewirtschaftung des Berliner Abwassersystems und Nutzen von lokalen und globalen Steuerungskonzepten</style>
internal-pdf://Schroeder and Pawlowsky-Reusing, 2004 - Integriertes Abwassermanagement-3578549248/Schroeder and Pawlowsky-Reusing, 2004 - Integriertes Abwassermanagement.PDFKWB documents.enlEndNote151547<style face="normal" font="default" size="100%">Current State And Development Of The Real-Time Control Of The Berlin Sewage System</style> file:///Z:/Dokument-Managementsystem/Dokuments/Publikation/Schroeder%20and%20Pawlowsky-Reusing,%202004%20-%20Current%20State%20And%20Development%20Of%20The%20Real-Time%20Control%20Of%20The%20Berlin%20Sewage%20System.pdfKWB documents.enlEndNote141417<style face="normal" font="default" size="100%">Integrated sewage management to reduce pollution load in Berlin</style>
internal-pdf://Schroeder and Pawlowsky-Reusing, 2004 - Integrated sewage manag-1339161344/Schroeder and Pawlowsky-Reusing, 2004 - Integrated sewage management to reduce pollution load in Berlin.pdfKWB documents.enlEndNote202047<style face="normal" font="default" size="100%">Model-based evaluation of a level dependant real-time control for sewage pump stations</style>internal-pdf://Schroeder et al, 2004 - Model-based evaluation of a level dependant real-time con-1338966016/Schroeder et al, 2004 - Model-based evaluation of a level dependant real-time control.pdfKWB documents.enlEndNote21121147<style face="normal" font="default" size="100%">Bewertung von Strategien der Abflusssteuerung mittels Kanalnetzsimulation</style>internal-pdf://Wasserwerkstatt_Schroeder-1046004736/Wasserwerkstatt_Schroeder.pdfKWB documents.enlEndNote878747<style face="normal" font="default" size="100%">Simulationsgestützte Entwicklung von Strategien der Verbundsteuerung am Beispiel des Berliner Entwässerungssystems</style>internal-pdf://Schroeder, 2004 - Simulations-3564206080/Schroeder, 2004 - Simulationsgestützte Entwicklung von Strategien der Verbundsteuerung am Beispiel des Berliner Entwässerungssystems, 9p..pdfKWB documents.enlEndNote9927<style face="normal" font="default" size="100%">Etude globale sur les cyanobactéries dans la rivière Erdre Travaux de recherche en laboratoire. Rapport final Janvier 2004</style>internal-pdf://Pineau et al., 2004- Etude globale sur les cyanobactéries dans la riviè-2862090241/Pineau et al., 2004- Etude globale sur les cyanobactéries dans la rivière Erdre (ERDRE), 100p.pdfKWB documents.enlEndNote6627<style face="normal" font="default" size="100%">RKM - Getrennte Erfassung von Röntgenkontrastmitteln - Zwischenbericht</style>internal-pdf://Pineau et al., 2004 - Getrennte Erfassung von Roentgenkontrastmitte-0093424641/Pineau et al., 2004 - Getrennte Erfassung von Roentgenkontrastmitteln - Zwischenbericht (RKM), 132p.pdfKWB documents.enlEndNote16116117<style face="normal" font="default" size="100%">Separate Discharge and Treatment of Urine, Faeces, and Grey Water - A Pilot Project</style>
KWB documents.enlEndNote353517<style face="normal" font="default" size="100%">Separate Ableitung und Behandlung von Urin, Fäkalien und Grauwasser – ein Pilotprojekt </style>internal-pdf://Peter-Froehlich et al, 2004 - Separate Ableitu-4203222785/Peter-Froehlich et al, 2004 - Separate Ableitung und Behandlung von Urin, Faekalien und Grauwasser – ein Pilotprojek, 6p.pdfKWB documents.enlEndNote343447<style face="normal" font="default" size="100%">Demonstration Project for Separate Discharge and Treatment of Urine, Faeces and Greywater - Cost Comparison with the Conventional Wastewater System</style>KWB documents.enlEndNote333347<style face="normal" font="default" size="100%">Sanitation Concepts for Separate Treatment of Urine, Faeces and Greywater - Demonstration Project in Berlin, Germany</style>internal-pdf://Peter-Froehlich et al, 2004 - Sanitation Concepts for Separate Treatment, 9p-1954529537/Peter-Froehlich et al, 2004 - Sanitation Concepts for Separate Treatment, 9p.pdfKWB documents.enlEndNote323247<style face="normal" font="default" size="100%">Demonstration Project for Separate Discharge and Treatment of Urine, Faeces and Greywater – First Results</style>internal-pdf://Peter-Froehlich et al, 2004-3866977281/Peter-Froehlich et al, 2004 - Demonstration Project for Separate Discharge and Treatment of Urine, Faeces and Greywater – First Results, 8p.pdfKWB documents.enlEndNote898917<style face="normal" font="default" size="100%">Investigating the influence of treated sewage in ground- and surface water using wastewater indicators in Berlin, Germany</style>
internal-pdf://Massmann et al - acta_hydrochimica_2004 - Investigating the influence of tre-2700838400/Massmann et al - acta_hydrochimica_2004 - Investigating the influence of treated sewage in.pdfKWB documents.enlEndNote13213247<style face="normal" font="default" size="100%">Investigating surface water - groundwater interactions with the help of sewage indicators in Berlin, Germany</style>internal-pdf://Massmann et al - 2004 -Investigatin-3908776192/Massmann et al - 2004 -Investigating surface water - groundwater interactions with the help of sewage indicators in Berlin, Germany.PDFKWB documents.enlEndNote24224247<style face="normal" font="default" size="11">Pegelbasierte Förderstromregelung - eine Möglichkeit zur gezielten Bewirtschaftung des Kanals</style>KWB documents.enlEndNote414127<style face="normal" font="default" size="100%">Machbarkeitsstudie für die Einrichtung eines Informations- und Testzentrums Messtechnik (ITZM) im Wasser- und Abwasserbereich</style>internal-pdf://Luehr et al., 2004 - Informations- und Testzentrums Messtechnik im Wasser (ITZM-1488213248/Luehr et al., 2004 - Informations- und Testzentrums Messtechnik im Wasser (ITZM), 89p.pdfKWB documents.enlEndNote272747<style face="normal" font="default" size="100%">Etude globale sur les cyanobactéries et leurs toxines dans la rivière Erdre (France)</style>internal-pdf://Luck et al., 2004 - Etude globale sur les cyanobacteries-0833545472/Luck et al., 2004 - Etude globale sur les cyanobacteries et leurs toxines dans la rivière Erdre (France), 11p..pdfKWB documents.enlEndNote393927<style face="normal" font="default" size="100%">Progress Report No. 01 - Sanitation Concepts for Separate Treatment of Urine, Faeces and Greywater (SCST)</style>internal-pdf://Luck et al., 2004 - LIFE-SCST-Progress Report Aug 2004 (SCST), 47p-1587062272/Luck et al., 2004 - LIFE-SCST-Progress Report Aug 2004 (SCST), 47p.pdfKWB documents.enlEndNote444427<style face="normal" font="default" size="100%">12 Jahre Pilotbetrieb Karolinenhöhe – eine erste Auswertung</style>internal-pdf://2111833628/Schriftenreihe_KWB_Band8_webversion_gesichert.pdfKWB documents.enlEndNote757547<style face="normal" font="default" size="100%">Outcomes of a 2-year investigation of Membrane Bioreactor Process configurations for biological advanced nutrients removal from municipal wastewater</style>KWB documents.enlEndNote474727<style face="normal" font="default" size="100%">Application of Liquid Chromatography-Online Carbon Detection (LC-OCD) to the understanding of organic fouling in membrane bioreactors (MBRs)</style>internal-pdf://Laabs et al., 2004 - Understanding of organic fouling in membrane bioreactors-0894709504/Laabs et al., 2004 - Understanding of organic fouling in membrane bioreactors (MBRs), 80p.pdfKWB documents.enlEndNote28328327<style face="normal" font="default" size="100%">Beteiligung der Öffentlichkeit im Koordinierungsraum Havel</style>internal-pdf://Schriftenreihe_KWB_bd1_ECOLOG-0692657408/Schriftenreihe_KWB_bd1_ECOLOG.pdfKWB documents.enlEndNote11111117<style face="normal" font="default" size="100%">Field Studies on the Fate and Transport of Pharmaceutical Residues in Bank Filtration</style>
internal-pdf://Heberer et al - GWMR 2004 - Field Studies on the Fate and Transport of-3709083393/Heberer et al - GWMR 2004 - Field Studies on the Fate and Transport of.pdfKWB documents.enlEndNote999947<style face="normal" font="default" size="100%">Behavior of bulk organics and trace pollutants during bank filtration and groundwater recharge of wastewater-impacted surface waters</style>internal-pdf://Gruenheid et al - Annually Meeting of the GdCh 2004 - Behavior of -2631415040/Gruenheid et al - Annually Meeting of the GdCh 2004 - Behavior of bulk organics and trace pollutants.PDFKWB documents.enlEndNote10010047<style face="normal" font="default" size="100%">Behavior of Trace Pollutants During Bank Filtration and Ground Water Recharge of Wastewater-impacted Surface Waters</style>internal-pdf://Gruenheid, S., Jekel, M. - International Confe-0937181184/Gruenheid, S., Jekel, M. - International Conference on Pharmaceuticals and Endocrine_2004 - Behavior of Trace Pollutants.pdfKWB documents.enlEndNote939347<style face="normal" font="default" size="100%">Cleaning capacity of bank filtration and artificial recharge with influence of treated waste water</style>internal-pdf://Fritz et al - Chemrawn 2004 - Cleaning-0963738880/Fritz et al - Chemrawn 2004 - Cleaning capacity of bank filtration and artificial recharge with influence of treated waste water.pdfKWB documents.enlEndNote4427<style face="normal" font="default" size="100%">Berlinbeach - Erarbeitung eines Verfahrens zur Vermeidung von Einleitungen aus der Mischkanalisation in städtische Fließgewässer</style> internal-pdf://Engel et al., 2004 - Berlinbeach, 85p-2745724673/Engel et al., 2004 - Berlinbeach, 85p.pdfKWB documents.enlEndNote909017<style face="normal" font="default" size="100%">Contribution of the colmation layer to the elimination of coliphages by slow sand filtration</style>
internal-pdf://Dizer et al - Wat. Sci. & Technol._2004 - Contribution of the colma-3288398081/Dizer et al - Wat. Sci. & Technol._2004 - Contribution of the colmation layer to the elimination of.pdfKWB documents.enlEndNote25225232<style face="normal" font="default" size="11">Modelisation des Sous-Bassins Versants Berlin V et XII, Tests de Scenarios d’Amelioration</style>internal-pdf://Rapport_Nicolas Daspres-4271420672/Rapport_Nicolas Daspres.pdfKWB documents.enlEndNote7727<style face="normal" font="default" size="100%">Threshold Values for Oligotrophication of Lake Tegel and Schlachtensee, Berlin - Analysis of System Components and Causalities</style>internal-pdf://Chorus et a.l, 2004 - Threshold value for Oligotrophication (OLIGO), 50p-1638296577/Chorus et a.l, 2004 - Threshold value for Oligotrophication (OLIGO), 50p.pdfKWB documents.enlEndNote818147<style face="normal" font="default" size="100%">Langzeituntersuchungen zur Entfernung organischer Spurenstoffe mit zwei Membranbelebungsanlagen im Vergleich zu einem konventionellen Klärwerk</style>internal-pdf://Zue-2480852480/Zuehlke, 2003 - Langzeituntersuchungen zur Entfernung organischer Spurenstoffe mit zwei Membranbelebungsanlagen im Vergleich zu einem konventionellen Klärwerk, 12p.pdfKWB documents.enlEndNote858547<style face="normal" font="default" size="100%">Zustand und Entwicklung der Steuerung des Berliner Entwässerungssystems</style>internal-pdf://Schroeder_ATV-DVWK and VDIVDE Symposium_2003 - Z-3371392000/Schroeder_ATV-DVWK and VDIVDE Symposium_2003 - Zustand und Entwicklung der Steuerung des Berliner Entwässerungssystems.pdfinternal-pdf://Plakat-ISM-0810904320/Plakat-ISM.pdfKWB documents.enlEndNote191947<style face="normal" font="default" size="100%">Integriertes Abwasser Management – Aufbau eines integrierten Modells zur Optimierung des Berliner Abwasser Systems</style>internal-pdf://Schroeder et al, 2003 - Integriertes Abwasser Management – Aufbau eines integriert-2962503168/Schroeder et al, 2003 - Integriertes Abwasser Management – Aufbau eines integrierten.pdfKWB documents.enlEndNote787847<style face="normal" font="default" size="100%">Zusammenhang zwischen Membranfouling und gelösten Substanzen in Membranbelebungsreaktoren</style>internal-pdf://Rosenberger, 2003 - Zusammenhang zwischen Membranfou-1992229120/Rosenberger, 2003 - Zusammenhang zwischen Membranfouling und gelösten Substanzen in Membranbelebungsreaktoren, 14p.pdfKWB documents.enlEndNote303047<style face="normal" font="default" size="100%">Sanitärkonzepte zur getrennten Behandlung von Urin, Fäkalien und Grauwasser</style>internal-pdf://Peter-Froelich et al, 2003 - Sanitärkonzepte zur getrennt-1401289473/Peter-Froelich et al, 2003 - Sanitärkonzepte zur getrennten Behandlung von Urin, Fäkalien und Grauwasser, 10p.pdfKWB documents.enlEndNote404047<style face="normal" font="default" size="100%">Separate Discharge and Treatment of Urine, Faeces and Greywater Pilot Project</style>internal-pdf://Peter-Froelich et al., 2003 - Separate Discharge and T-2525290753/Peter-Froelich et al., 2003 - Separate Discharge and Treatment of Urine, Faeces and Greywater Pilot Project, 12p.pdfKWB documents.enlEndNote888847<style face="normal" font="default" size="100%">Using the Tritium/Helium Age Dating Method to characterise two river recharged aquifer systems in Germany</style>internal-pdf://Massmann et al - IUGG Conf_2-4076245248/Massmann et al - IUGG Conf_2003 - Using the TritiumHelium Age Dating Method to characterise two river recharged aquifer systems in Germany.pdfKWB documents.enlEndNote13813847<style face="normal" font="default" size="100%">Application of Different Tracers to Evaluate the Flow Regime at Riverbank Filtration Sites in Berlin, Germany</style>internal-pdf://Massmann et al - 2003 - Applicati-0889775617/Massmann et al - 2003 - Application of Different Tracers to Evaluate the Flow Regime at Riverbank Filtration Sites in Berlin, Germany.pdfKWB documents.enlEndNote24124147<style face="normal" font="default" size="11">Erfahrungen mit neuronalen Netzen für Simulationen des Kanalnetzes</style>KWB documents.enlEndNote25125132<style face="normal" font="default" size="11">Modélisation du transport de matières en suspension dans le réseau d’assainissement de Berlin</style>internal-pdf://Rapport ISM Bruno Lemaire-0714133248/Rapport ISM Bruno Lemaire.pdfKWB documents.enlEndNote25325332<style face="normal" font="default" size="11">Modelisation d’un Reseau d’Assainissement, Berlin VIII</style>internal-pdf://Report_Romain Laborde-0832226816/Report_Romain Laborde.pdfKWB documents.enlEndNote2227<style face="normal" font="default" size="100%">Beteiligung der Öffentlichkeit im Koordinierungsraum Havel (Berlin-Brandenburg)</style>internal-pdf://Kranz et al., 2003 - Beteiligung der Oeffentlichkeit im Koordinierungsraum Havel,-1649420288/Kranz et al., 2003 - Beteiligung der Oeffentlichkeit im Koordinierungsraum Havel, 71p.pdfKWB documents.enlEndNote11411447<style face="normal" font="default" size="100%">Occurrence and Fate of Pharmaceuticals During Bank Filtration</style>internal-pdf://Heberer et al - Wasser Berlin 2003 - Occurrence and Fate of Pharmace-0304175873/Heberer et al - Wasser Berlin 2003 - Occurrence and Fate of Pharmaceuticals During Bank Filtration.PDFKWB documents.enlEndNote737347<style face="normal" font="default" size="100%">Biologische Phosphorentfernung mit einer nachgeschaltetenDenitrifikation im Membranbelebungsverfahren</style>internal-pdf://Gnirss, 2003 - Biologische Phosphorentfernung-1950305537/Gnirss, 2003 - Biologische Phosphorentfernung mit einer nachgeschaltetenDenitrifikation im Membranbelebungsverfahren, 13p.pdfKWB documents.enlEndNote949417<style face="normal" font="default" size="100%">Process studies in a bank filtration system in Berlin using environmental tracers</style>internal-pdf://Fritz et al - hydroplus 2003 - Process studies in a ba-0192266240/Fritz et al - hydroplus 2003 - Process studies in a bank filtration system in Berlin using environmental tracers.pdfKWB documents.enlEndNote727217<style face="normal" font="default" size="100%">Membranbelebungsverfahren mit vermehrter biologischer Phosphorelimination (EBPR)</style>
internal-pdf://Adam, 2003 - Membranbelebungsverfahren mit vermehrter biologischer P-1262116097/Adam, 2003 - Membranbelebungsverfahren mit vermehrter biologischer Phosphorelimination (EBPR), 11p.pdfKWB documents.enlEndNote181847<style face="normal" font="default" size="100%">Integrated Sewage Management - Setup of networked models for analysis and improvement of the Berlin sewage system</style>internal-pdf://Schroeder and Gommery, -2829209088/Schroeder and Gommery, 2002 - Integrated Sewage Management - Setup of networked models for analysis and improvement of the Berlin sewage system.pdfKWB documents.enlEndNote28528547<style face="normal" font="default" size="11">Integrated Sewage Management - Setup of an integrated strategy for the control of the Berlin sewage system</style>internal-pdf://Schroeder_2002_Integrated Sewage Management1-0374555136/Schroeder_2002_Integrated Sewage Management1.pdfKWB documents.enlEndNote747417<style face="normal" font="default" size="100%">Process configurations adapted to membrane bioreactors for enhanced biological phosphorous and nitrogen removal</style>
internal-pdf://Lesjean, 2002 - Process configurat-2507094273/Lesjean, 2002 - Process configurations adapted to membrane bioreactors for enhanced biological phosphorous and nitrogen removal , 8p.pdfKWB documents.enlEndNote484827<style face="normal" font="default" size="100%">Preliminary Studies on P-removal by Adsorption from MBR filtrates</style>internal-pdf://Kornmüller, 2002- Preliminary Studies on P-removal by Adsorption from MB-2074508288/Kornmüller, 2002- Preliminary Studies on P-removal by Adsorption from MBR filtrates (IMF), 53p.pdfKWB documents.enlEndNote11311317<style face="normal" font="default" size="100%">Occurrence, fate, and removal of pharmaceutical residues in the aquatic environment: a review of recent research data</style>
internal-pdf://Heberer, T. - Toxicology Letter-0354100737/Heberer, T. - Toxicology Letters 2002 - Occurrence, fate, and removal of pharmaceutical residues in the aquatic environment a review of.PDFKWB documents.enlEndNote464627<style face="normal" font="default" size="100%">Evaluation of enhanced biological phosphorus removal process in membrane bioreactors (operation from Oct 2001 to Apr 2002 with a sludge age of 26 days)</style>internal-pdf://Gnirss et al., 2002 - Evaluation of enhanced biological phosphorus remo-0615544321/Gnirss et al., 2002 - Evaluation of enhanced biological phosphorus removal process in MBR , 52p.pdfKWB documents.enlEndNote28628627<style face="normal" font="default" size="11">NASRI Natural and Artificial Systems for Recharge and Infiltration Period 2001-2002</style>internal-pdf://Fritz et al., 2002 - Intermediate NASRI Report 2001-2002, 342p-3615161600/Fritz et al., 2002 - Intermediate NASRI Report 2001-2002, 342p.pdfKWB documents.enlEndNote25425432<style face="normal" font="default" size="11">Modélisation et campagne de mesures sur le bassin-versant Berlin VII</style>internal-pdf://Souchon_2001_Thesis_ISM-3986427392/Souchon_2001_Thesis_ISM.pdf \ No newline at end of file diff --git a/man/check_for_differences.Rd b/man/check_for_differences.Rd index 3dd295a..aa80abb 100644 --- a/man/check_for_differences.Rd +++ b/man/check_for_differences.Rd @@ -28,8 +28,8 @@ Check two Dataframes for Differences ### Check differences between two different versions of "KWB_documents.xml" ############################################################################ -old_xml <- extdata_file("2019-01-07_KWB_documents.xml") -new_xml <- extdata_file("2019-01-14_KWB_documents.xml") +old_xml <- extdata_file("2019-01-14_KWB_documents.xml") +new_xml <- extdata_file("2019-07-09_KWB_documents.xml") old_list <- kwb.endnote::create_endnote_list(old_xml) new_list <- kwb.endnote::create_endnote_list(new_xml) old_df <- kwb.endnote::create_references_df(old_list) From ed71f9111499a60883984e8685586bbeb7fc07d3 Mon Sep 17 00:00:00 2001 From: mrustl Date: Thu, 24 Oct 2019 16:35:02 +0200 Subject: [PATCH 6/7] keep up with Hauke (function moved to kwb.file) --- DESCRIPTION | 4 ++-- NAMESPACE | 2 +- R/.setup.R | 2 +- R/create_df_from_endnote_xml.R | 4 ++-- 4 files changed, 6 insertions(+), 6 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index eee26ce..11349f0 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -25,7 +25,7 @@ Imports: forcats, fs, ggplot2, - kwb.fakin, + kwb.file, kwb.read, kwb.utils, magrittr, @@ -41,7 +41,7 @@ Suggests: knitr, rmarkdown Remotes: - github::kwb-r/kwb.fakin, + github::kwb-r/kwb.file, github::kwb-r/kwb.read, github::kwb-r/kwb.utils Encoding: UTF-8 diff --git a/NAMESPACE b/NAMESPACE index 39bfa62..cbc5741 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -58,7 +58,7 @@ importFrom(dplyr,select_if) importFrom(dplyr,starts_with) importFrom(forcats,fct_reorder) importFrom(fs,file_info) -importFrom(kwb.fakin,toSubdirMatrix) +importFrom(kwb.file,to_subdir_matrix) importFrom(kwb.read,read_xml_as_path_value) importFrom(kwb.utils,catAndRun) importFrom(kwb.utils,catIf) diff --git a/R/.setup.R b/R/.setup.R index cf5cdbc..1123702 100644 --- a/R/.setup.R +++ b/R/.setup.R @@ -21,7 +21,7 @@ kwb.pkgbuild::add_gitlabci_to_ghpages("kwb.endnote", dest_dir = tempdir()) usethis::use_vignette("analyse-endnote") -pkg_dependencies <- c('dplyr', 'kwb.fakin', 'kwb.read', 'stringr') +pkg_dependencies <- c('dplyr', 'kwb.file', 'kwb.read', 'stringr') sapply(pkg_dependencies, usethis::use_package) desc::desc_normalize() diff --git a/R/create_df_from_endnote_xml.R b/R/create_df_from_endnote_xml.R index 3f1e7e7..ccf1153 100644 --- a/R/create_df_from_endnote_xml.R +++ b/R/create_df_from_endnote_xml.R @@ -6,7 +6,7 @@ #' from get_reference_type_names() #' @export #' @importFrom kwb.read read_xml_as_path_value -#' @importFrom kwb.fakin toSubdirMatrix +#' @importFrom kwb.file to_subdir_matrix #' @importFrom stringr str_remove_all #' @importFrom dplyr left_join #' @importFrom fs file_info @@ -21,7 +21,7 @@ create_df_from_endnote_xml <- function(endnote_xml = default_xml()) { stringr::str_remove_all(pattern = "^/xml/records/record") references_df <- kwb.utils::asNoFactorDataFrame(cbind( - kwb.fakin::toSubdirMatrix(xml_paths), + kwb.file::to_subdir_matrix(xml_paths), references[, -1] )) From fdf04841c962cf9f90ecbadffa5142233161077a Mon Sep 17 00:00:00 2001 From: mrustl Date: Fri, 10 Jan 2020 12:57:58 +0100 Subject: [PATCH 7/7] prepare release v0.1.0 --- DESCRIPTION | 2 +- LICENSE | 2 +- LICENSE.md | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 11349f0..74c7e38 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: kwb.endnote Title: Helper Functions for Analysing KWB Endnote Library (Exported as .xml) -Version: 0.0.0.9000 +Version: 0.1.0 Authors@R: c(person(given = "Michael", family = "Rustler", diff --git a/LICENSE b/LICENSE index be5f543..6935a17 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,6 @@ # MIT License -Copyright (c) 2019 Kompetenzzentrum Wasser Berlin gGmbH (KWB) +Copyright (c) 2019 - 2020 Kompetenzzentrum Wasser Berlin gGmbH (KWB) Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal diff --git a/LICENSE.md b/LICENSE.md index be5f543..6935a17 100644 --- a/LICENSE.md +++ b/LICENSE.md @@ -1,6 +1,6 @@ # MIT License -Copyright (c) 2019 Kompetenzzentrum Wasser Berlin gGmbH (KWB) +Copyright (c) 2019 - 2020 Kompetenzzentrum Wasser Berlin gGmbH (KWB) Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal