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config_template.json
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config_template.json
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{
"FILES" : [
{
"FILENAME" : "test-user-data-upload/GTEx_subset_GExpMatrix.tsv",
"PLATFORM" : "platform",
"PIPELINE" : "pipeline",
"DATATYPE" : "mrna",
"BIGQUERY_TABLE_NAME" : "cgc_mrna_1_1"
},
{
"COLUMNS" : [
"NAME" : "SAMPLE_ID",
"TYPE" : "STRING",
"INDEX" : 1,
"MAP_TO" : "SampleBarcode"
],
"FILENAME" : "test-bucket/SampleList.txt",
"PLATFORM" : "Platform",
"PIPELINE" : "Pipeline",
"DATATYPE" : "user_gen"
}
],
"USER_METADATA_TABLES": {
"METADATA_DATA" : "user_metadata_1_1",
"METADATA_SAMPLES" : "user_metadata_samples_1_1",
"FEATURE_DEFS": "user_feature_defs_1_1"
},
"USER_PROJECT" : 1,
"STUDY" : 1,
"BUCKET" : "test-user-data-upload",
"GOOGLE_PROJECT" : "isb-cgc-test",
"BIGQUERY_DATASET" : "test"
}